Open AccessSaccharopolyspora rhizosphaerae sp. nov., an actinomycete isolated from rhizosphere soil in Thailand
Author(s) -
Bungonsiri Intra,
Jirayut Euanorasetr,
A Take,
Yuki Inahashi,
Masayuki Mori,
Watanalai Panbangred,
Atsuko Matsumoto
Publication year - 2019
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.003307
Subject(s) - biology , rhizosphere , 16s ribosomal rna , peptidoglycan , strain (injury) , microbiology and biotechnology , arabinose , botany , actinomycetales , soil microbiology , bacteria , cell wall , biochemistry , gene , xylose , streptomyces , genetics , fermentation , anatomy
A novel actinomycete, designated as strain H219 T , was isolated from rhizosphere soil collected under an Elephant ear plant (Colocasiaesculenta) in Bangkok, Thailand. Strain H219 T was characterised using a polyphasic approach. Phylogenetic analysis of the 16S rRNA gene sequences revealed that this isolate was most closely related to Saccharopolyspora tripterygii JCM 32123 T (97.6 %), Saccharopolyspora dendranthemae NBRC 108675 T (97.5 %) and Saccharopolyspora flava NBRC 16345 T (97.5 %). However, DNA-DNA hybridization analyses showed a low relatedness in the range of 39-48 % between the novel isolate and the above closely related strains. The cell-wall peptidoglycan of strain H219 T contained meso-diaminopimelic acid. The diagnostic whole-cell sugars consisted of arabinose and galactose. The cellular fatty acid profile mainly comprised iso-C16 : 0, anteiso-C17 : 0, iso-C15 : 0, and 10-methyl C17 : 0. The major menaquinone was MK-9(H4). The detected phospholipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylethanolamine-containing hydroxylated fatty acids and an unknown phospholipid. The DNA G+C content was 70.6 mol%. Strain H219 T represented chemotaxonomic and morphological characteristics that were consistent with members of the genus Saccharopolyspora. However, strain H219 T could be distinguished from closely related strains by several phenotypic properties. Based on the data from the polyphasic studies, we propose that strain H219 T is a novel species within the genus Saccharopolyspora, Saccharopolysporarhizosphaerae sp. nov. The type strain is H219 T (=TBRC 8564 T =NBRC 113388 T ).