Open AccessActinophytocola glycyrrhizae sp. nov. isolated from the rhizosphere of Glycyrrhiza inflata
Author(s) -
Changqun Cao,
Yong Sun,
Bo Wu,
Shuai Zhao,
Bo Yuan,
Sheng Qin,
Jihong Jiang,
Ying Huang
Publication year - 2018
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.002864
Subject(s) - biology , 16s ribosomal rna , botany , rhamnose , mycelium , microbiology and biotechnology , rhizosphere , bacteria , galactose , biochemistry , genetics
A Gram-stain-positive, aerobic actinomycete, designated strain BMP B8152 T , was isolated from the rhizosphere of Glycyrrhiza inflata collected ashore, in Kashi, Xinjiang province, northwest PR China. A polyphasic approach was used to establish the taxonomic position of this strain. BMP B8152 T was observed to form non-fragmented substrate mycelium, and relatively scanty aerial mycelium with rod-shaped spores. Cell-wall hydrolysates contained meso-diaminopimelic acid, galactose, arabinose, glucose and rhamnose (trace). Mycolic acids were not detected. The diagnostic phospholipids were identified as diphosphatidylglycerol, phosphatidylethanolamine, hydroxyphosphatidylethanolamine, ninhydrin-positive phosphoglycolipid and phosphatidylinositol. The predominant menaquinone and fatty acid were MK-9(H4) and iso-branched hexadecanoate (iso-C16 : 0), respectively. The phylogenetic analyses based on the 16S rRNA gene sequences indicated that BMP B8152 T formed a distinct monophyletic clade clustered with Actinophytocola timorensisID05-A0653 T (98.8 % 16S rRNA gene sequence similarity), Actinophytocola oryzaeGMKU 367 T (98.6 %), Actinophytocola corallinaID06-A0464 T (98.2 %) and Actinophytocola burenkhanensisMN08-A0203 T (97.5 %). In addition, DNA-DNA hybridization values between BMP B8152 T and A. timorensisID05-A0653 T (44.2±3.6 %) and A. oryzaeGMKU 367 T (36.7±2.3 %) were well below the 70 % limit for species identification. The combined phenotypic and genotypic data indicate that the isolate represents a novel species of the genus Actinophytocola, for which the name Actinophytocola glycyrrhizae sp. nov., is proposed, with the type strain BMP B8152 T (=KCTC 49002 T =CGMCC 4.7433 T ).