Open AccessMethanoculleus sediminis sp. nov., a methanogen from sediments near a submarine mud volcano
Author(s) -
Sheng-Chung Chen,
Mei-Fei Chen,
MeiChin Lai,
Chieh-Yin Weng,
Shu-Hsing Wu,
Shu-Yen Lin,
Tsanyao Frank Yang,
Po-Chun Chen
Publication year - 2015
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijs.0.000233
Subject(s) - biology , methanogen , strain (injury) , phylogenetic tree , 16s ribosomal rna , whole genome sequencing , microbiology and biotechnology , genome , bacteria , gene , genetics , anatomy
A mesophilic, hydrogenotrophic methanogen, strain S3Fa T , was isolated from sediments collected by Ocean Researcher I cruise ORI-934 in 2010 near the submarine mud volcano MV4 located at the upper slope of south-west Taiwan. The methanogenic substrates utilized by strain S3Fa T were formate and H 2 /CO 2 but not acetate, secondary alcohols, methylamines, methanol or ethanol. Cells of strain S3Fa T were non-motile, irregular cocci, 0.5–1.0 μm in diameter. The surface-layer protein showed an Mr of 128 000.The optimum growth conditions were 37 °C, pH 7.1 and 0.17 M NaCl. The DNA G+C content of the genome of strain S3Fa T was 62.3 mol %. Phylogenetic analysis revealed that strain S3Fa T was most closely related to Methanoculleus marisnigri JR1 T (99.3 % 16S rRNA gene sequence similarity). Genome relatedness between strain S3Fa T and Methanoculleus marisnigri JR1 T was computed using both genome-to-genome distance analysis (GGDA) and average nucleotide identity (ANI) with values of 46.3–55.5 % and 93.08 %, respectively. Based on morphological, phenotypic, phylogenetic and genomic relatedness data, it is evident that strain S3Fa T represents a novel species of the genus Methanoculleus , for which the name Methanoculleus sediminis sp. nov. is proposed. The type strain is S3Fa T ( = BCRC AR10044 T = DSM 29354 T ).