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Predicting and Interpreting the Hofmeister Effects of Different Salts with Nucleic Bases and Aromatic Compounds Using Solubility Assay
Author(s) -
Hong Runyu,
Cheng Lixue,
Yao Yao,
Knowles Ben,
Zhang Yurun,
Kerins Michael,
Shkel Irina,
Record M. Thomas
Publication year - 2017
Publication title -
the faseb journal
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.709
H-Index - 277
eISSN - 1530-6860
pISSN - 0892-6638
DOI - 10.1096/fasebj.31.1_supplement.766.22
Subject(s) - chemistry , solubility , hofmeister series , nucleic acid , salt (chemistry) , nucleobase , naphthalene , chaotropic agent , inorganic chemistry , organic chemistry , computational chemistry , dna , biochemistry
The interaction between salts and nucleobases or aromatic compounds plays an important role in noncovalent biopolymer assembly processes such as DNA and RNA helix formation and protein‐nucleic acid interactions. The project determines effects of six salts selected from the Hofmeister series (NaF, KBr, KSCN, NaSCN, NH 4 Cl, NH 4 Br) on the solubility of 11 model compounds (nucleic bases, their analogs, and naphthalene) to experimentally quantify salt‐model compound preferential interactions (μ 23 ) using UV‐Vis spectroscopy. Values of μ 23 are obtained from the derivative of the logarithm of the model compound solubility with respect to the molal concentration of salt. Salt has the ability to either increase or decrease the solubility of the bases, which can be explained by their differences in interacting with various surface types of the model compounds, namely aromatic C, aromatic N, Sp3 C, Sp2 O, and Sp3 N. Results of this study indicates that for all the 11 model compounds investigated in this study, KSCN has the most favorable interactions whereas NaF has the most unfavorable interactions except with 26DAP. The differences in their ability to decrease (unfavorable interaction) or increase (favorable interaction) the solubility of bases corresponds with their rank orders among the Hofmeister series, in which the Na + and F − are at the stabilizing end but SCN − ion is at the destabilizing end. Through one‐way analysis, the breakdown of nucleobase's surface types allows us to study the specific interactions between salts and biopolymer surfaces. Setting Na+ as a reference point, relative strength of interaction potentials of Hofmeister ions with aromatic and aliphatic C surfaces are obtained, which in general follows the Hofmeister series. The quantities describing accumulation and exclusion of Hofmeister salts, Kp, are also obtained through calculation. Using Na + or K + as a reference, a dissection of salts’ Kp values to get ions’ Kp values illustrates that both aromatic and aliphatic C surfaces strongly exclude cations and accumulate SCN − . Further studies are required to make dissections on other surface types possible. The quantified α i values and water accessible area (ASA) data are used to predict μ 23 values. These predictions are compared with both our experimental data and published experimental data. The results confirm the effectiveness of our method and indicate potential applications in pharmaceutical, environmental, and biological studies.