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Generation of the Configurational Ensemble of an Intrinsically Disordered Protein
Author(s) -
Petridis Loukas
Publication year - 2020
Publication title -
the faseb journal
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.709
H-Index - 277
eISSN - 1530-6860
pISSN - 0892-6638
DOI - 10.1096/fasebj.2020.34.s1.04333
Subject(s) - flexibility (engineering) , oak ridge national laboratory , intrinsically disordered proteins , molecular dynamics , computer science , statistical physics , physics , nuclear magnetic resonance , mathematics , nuclear physics , statistics , quantum mechanics
A major challenge in biology is characterizing the structural flexibility of intrinsically disordered proteins (IDPs). Ensemble‐averaged experimental data do not provide the underlying protein structures. Here, we performed independently small‐angle neutron and X‐ray scattering experiments and unbiased molecular dynamics simulations to probe the solution structure of an IDP. We report that enhancing the sampling of the simulations can generate an ensemble of IDP structures in quantitative agreement with scattering and NMR, without the need for biasing the simulation or reweighting the results. The demonstration of established simulation technology that produces accurate physical models of flexible biosystems may pave the way to relating conformational flexibility to biological function. Support or Funding Information This work is supported by the Laboratory Directed Research and Development Program of Oak Ridge National Laboratory, and by project ERKP300 funded by the Office of Biological & Environmental Research in the Department of Energy Office of Science.Configurational ensemble of c‐Src kinaseShrestha , et al. Proc. Natl. Acad. Sci. U.S.A. 116 , 20446 ( 2019 ).