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Increasing upstream chromatin long‐range interactions may favor induction of circular RNAs in lysoPC‐activated human aortic endothelial cells
Author(s) -
Li Angus,
Sun Yu,
Drummer Charles,
Yu Daohai,
Zhou Yan,
Li Xinyuan,
Johnson Candice,
Yu Caijia,
Yang William,
Jiang Xiaohua,
Hu Wenhui,
Wang Hong,
Yang Xiaofeng
Publication year - 2019
Publication title -
the faseb journal
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.709
H-Index - 277
eISSN - 1530-6860
pISSN - 0892-6638
DOI - 10.1096/fasebj.2019.33.1_supplement.496.68
Subject(s) - downregulation and upregulation , chromatin , microbiology and biotechnology , circular rna , biology , rna splicing , microrna , rna , alternative splicing , chemistry , gene , messenger rna , genetics
Circular RNAs (circRNAs) are classified as non‐coding RNA that form covalently closed continuous loops and act as gene regulators in physiological and disease conditions. We hypothesize that proatherogenic lipid lysophosphatidylcholine (LPC) induce a set of circRNAs in human aortic endothelial cell (HAEC) activation. We performed circRNA analysis by searching our RNA‐Seq data from LPC‐activated HAECs and found: 1) LPC induce significant modulation of 77 newly characterized cirRNAs, among which 47 circRNAs (61%) are upregulated; 2) 34 (72%) out of 47 upregulated circRNAs are upregulated when the corresponding mRNAs are downregulated, suggesting that the majority of circRNAs are upregulated presumably via LPC‐induced “abnormal splicing” when the canonical splicing for generation of corresponding mRNAs is suppressed; 3) Upregulation of 47 circRNAs is associated with LPC‐upregulated cholesterol synthesis‐SREBP2 pathway and LPC‐downregulated TGF‐β pathway; 4) increased upstream chromatin long‐range interaction sites to circRNA related genes favor circRNA generation over canonical splicing for mRNAs, suggesting that shifting chromatin long‐range interaction sites from downstream to upstream promotes induction of a list of circular RNAs in lysoPC‐activated human aortic endothelial cells; 5) six significantly changed circRNAs may have sponge functions for miRNAs; and 6) 74% significantly changed circRNAs contain open reading frames, suggesting that short proteins may interfere the protein interaction‐based signaling. Our finding have demonstrated for the first time that a new set of LPC‐induced circRNAs may contribute to proatherogenic LPC‐induced HAEC activation. These novel insights may lead to identification of new therapeutic targets for treating metabolic cardiovascular diseases, inflammations and cancers. Support or Funding Information This work was supported by NIH grants to Drs. XF Yang and H Wang. This abstract is from the Experimental Biology 2019 Meeting. There is no full text article associated with this abstract published in The FASEB Journal .