The Quest for Orthologs orthology benchmark service in 2022 | Zendy

Yannis Nevers | Zendy; Tamsin E. M. Jones | Zendy; Dushyanth Jyothi | Zendy; Bethan Yates | Zendy; Meritxell Ferret | Zendy; Laura Portell-Silva | Zendy; Laia Codó | Zendy; Salvatore Cosentino | Zendy; Marina MarcetHouben | Zendy; Anna Vlasova | Zendy; Laetitia Poidevin | Zendy; Arnaud Kress | Zendy; Mark Hickman | Zendy; Emma Persson | Zendy; Ivana Piližota | Zendy; Cristina Guijarro-Clarke | Zendy; Adrian Altenhoff | Zendy; Elspeth A Bruford | Zendy; Christophe Dessimoz | Zendy; Ingo Ebersberger | Zendy; David Emms | Zendy; Toni Gabaldón | Zendy; Natasha Glover | Zendy; Yanhui Hu | Zendy; Wataru Iwasaki | Zendy; Tamsin E M Jones | Zendy; Odile Lecompte | Zendy; Benjamin Linard | Zendy; María Martin | Zendy; David S. Roos | Zendy; Erik Sonhammer | Zendy; Paul D. Thomas | Zendy; David Thybert | Zendy; Klaas Vandepoele | Zendy; Salvador Capella-Gutiérrez | Zendy; Asier GonzalezUriarte | Zendy; Javier Garrayo-Ventas | Zendy; Dmitry Repchevsky | Zendy; Vicky Sundesha | Zendy; Erik L. L. Sonnhammer | Zendy; Elspeth A. Bruford | Zendy

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The Quest for Orthologs orthology benchmark service in 2022

Author(s) -

Yannis Nevers,

Tamsin E. M. Jones,

Dushyanth Jyothi,

Bethan Yates,

Meritxell Ferret,

Laura Portell-Silva,

Laia Codó,

Salvatore Cosentino,

Marina MarcetHouben,

Anna Vlasova,

Laetitia Poidevin,

Arnaud Kress,

Mark Hickman,

Emma Persson,

Ivana Piližota,

Cristina Guijarro-Clarke,

Adrian Altenhoff,

Elspeth A Bruford,

Christophe Dessimoz,

Ingo Ebersberger,

David Emms,

Toni Gabaldón,

Natasha Glover,

Yanhui Hu,

Wataru Iwasaki,

Tamsin E M Jones,

Odile Lecompte,

Benjamin Linard,

María Martin,

David S. Roos,

Erik Sonhammer,

Paul D. Thomas,

David Thybert,

Klaas Vandepoele,

Salvador Capella-Gutiérrez,

Asier GonzalezUriarte,

Javier Garrayo-Ventas,

Dmitry Repchevsky,

Vicky Sundesha,

Erik L. L. Sonnhammer,

Elspeth A. Bruford

Publication year - 2022

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkac330

Subject(s) - biology , benchmark (surveying) , resource (disambiguation) , computational biology , inference , service (business) , genomics , genome , gene , genetics , computer science , artificial intelligence , computer network , economy , geodesy , economics , geography

The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for many comparative genomics and phylogenetic analysis) over a standard dataset and through common procedures. The Quest for Orthologs Consortium is dedicated to maintaining the resource up to date, through regular updates of the Reference Proteomes and increasingly accessible data through the OpenEBench platform. For this update, we have added a new benchmark based on curated orthology assertion from the Vertebrate Gene Nomenclature Committee, and provided an example meta-analysis of the public predictions present on the platform.

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