Open AccessNRSub: a non-redundant data base for theBacillus subtilisgenome
Author(s) -
Guy Perrière,
Manolo Gouy,
Takashi Gojobori
Publication year - 1994
Publication title -
nucleic acids research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 9.008
H-Index - 537
eISSN - 1362-4954
pISSN - 0305-1048
DOI - 10.1093/nar/22.25.5525
Subject(s) - contig , file transfer protocol , biology , flat file database , bacillus subtilis , base (topology) , genome , database , file format , window (computing) , computational biology , information retrieval , computer science , genetics , data file , gene , world wide web , journaling file system , versioning file system , mathematical analysis , the internet , mathematics , bacteria
We have organized the DNA sequences of Bacillus subtillis from the EMBL collection to build the NRSub data base. This data base is free from duplications and all detected overlapping sequences are merged into contigs. Data on gene mapping and codon usage are also included. NRSub is publically available through anonymous FTP in flat file format or structured on the form of an ACNUC data base. Under this format, it is possible to use NRSub with the retrieval program Query--win. This program integrates a graphical interface and may be installed on any kind of UNX computer under X Window and on which the Vibrant and Motif libraries are available.