Genome sequence of the barred knifejawOplegnathus fasciatus(Temminck & Schlegel, 1844): the first chromosome-level draft genome in the family Oplegnathidae
Author(s) -
Yongshuang Xiao,
Zhizhong Xiao,
Daoyuan Ma,
Jing Liu,
Jun Li
Publication year - 2019
Publication title -
gigascience
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.947
H-Index - 54
ISSN - 2047-217X
DOI - 10.1093/gigascience/giz013
Subject(s) - genome , chromosome , whole genome sequencing , biology , genetics , computational biology , evolutionary biology , gene
The barred knifejaw (Oplegnathus fasciatus), a member of the Oplegnathidae family of the Centrarchiformes, is a commercially important rocky reef fish native to East Asia. Oplegnathus fasciatus has become an important fishery resource for offshore cage aquaculture and fish stocking of marine ranching in China, Japan, and Korea. Recently, sexual dimorphism in growth with neo-sex chromosome and widespread biotic diseases in O. fasciatus have been increasing concern in the industry. However, adequate genome resources for gaining insight into sex-determining mechanisms and establishing genetically resistant breeding systems for O. fasciatus are lacking. Here, we analyzed the entire genome of a female O. fasciatus fish using long-read sequencing and Hi-C data to generate chromosome-length scaffolds and a highly contiguous genome assembly.
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