Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data | Zendy

Konstantin Okonechnikov | Zendy; Ana Conesa | Zendy; Fernando García-Alcalde | Zendy

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Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

Author(s) -

Konstantin Okonechnikov,

Ana Conesa,

Fernando García-Alcalde

Publication year - 2015

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btv566

Subject(s) - computer science , software , pipeline (software) , throughput , data mining , sample (material) , documentation , graphical user interface , data processing , task (project management) , interface (matter) , database , operating system , chemistry , management , bubble , chromatography , maximum bubble pressure method , economics , wireless

Detection of random errors and systematic biases is a crucial step of a robust pipeline for processing high-throughput sequencing (HTS) data. Bioinformatics software tools capable of performing this task are available, either for general analysis of HTS data or targeted to a specific sequencing technology. However, most of the existing QC instruments only allow processing of one sample at a time.

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