ggtranscript: an R package for the visualization and interpretation of transcript isoforms usingggplot2
Author(s) -
Emil K. Gustavsson,
David Zhang,
Regina H. Reynolds,
Sonia García-Ruiz,
Mina Ryten
Publication year - 2022
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btac409
Subject(s) - visualization , documentation , computer science , r package , interpretation (philosophy) , open source , source code , software , software package , programming language , data mining
The advent of long-read sequencing technologies has increased demand for the visualization and interpretation of transcripts. However, tools that perform such visualizations remain inflexible and lack the ability to easily identify differences between transcript structures. Here, we introduce ggtranscript, an R package that provides a fast and flexible method to visualize and compare transcripts. As a ggplot2 extension, ggtranscript inherits the functionality and familiarity of ggplot2 making it easy to use.
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