Open AccessONTdeCIPHER: an amplicon-based nanopore sequencing pipeline for tracking pathogen variants
Author(s) -
Emira Chérif,
Fatou Thiam,
Mohammad Salma,
Georgina A. RiveraIngraham,
Fabienne Justy,
Théo Deremarque,
Damien Breugnot,
Jean-Claude Doudou,
Rodolphe E. Gozlan,
Marine Combe
Publication year - 2022
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btac043
Subject(s) - nanopore sequencing , amplicon , pipeline (software) , minion , phylogenetic tree , computational biology , amplicon sequencing , computer science , dna sequencing , genome , multiple sequence alignment , biology , sequence alignment , genetics , gene , polymerase chain reaction , peptide sequence , programming language , 16s ribosomal rna
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