PATO: Pangenome Analysis Toolkit | Zendy

Miguel D. Fernández-de-Bobadilla | Zendy; Alba Talavera-Rodríguez | Zendy; Lucía Chacón | Zendy; Fernando Baquero | Zendy; Teresa M. Coque | Zendy; Val F. Lanza | Zendy

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PATO: Pangenome Analysis Toolkit

Author(s) -

Miguel D. Fernández-de-Bobadilla,

Alba Talavera-Rodríguez,

Lucía Chacón,

Fernando Baquero,

Teresa M. Coque,

Val F. Lanza

Publication year - 2021

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btab697

Subject(s) - computer science

We present the Pangenome Analysis Toolkit (PATO) designed to simultaneously analyze thousands of genomes using a desktop computer. The tool performs common tasks of pangenome analysis such as core-genome definition and accessory genome properties and includes new features that help characterize population structure, annotate pathogenic features and create gene sharedness networks. PATO has been developed in R to integrate with the large set of tools available for genetic, phylogenetic and statistical analysis in this environment.

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