Hierarchical Bayesian models of transcriptional and translational regulation processes with delays
Author(s) -
Mark Jayson Cortez,
Hyukpyo Hong,
Boseung Choi,
Jae Kyoung Kim,
Krešimir Josić́
Publication year - 2021
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btab618
Subject(s) - inference , computer science , population , bayesian probability , curse of dimensionality , bayesian inference , bayes' theorem , python (programming language) , data mining , artificial intelligence , algorithm , demography , sociology , operating system
Simultaneous recordings of gene network dynamics across large populations have revealed that cell characteristics vary considerably even in clonal lines. Inferring the variability of parameters that determine gene dynamics is key to understanding cellular behavior. However, this is complicated by the fact that the outcomes and effects of many reactions are not observable directly. Unobserved reactions can be replaced with time delays to reduce model dimensionality and simplify inference. However, the resulting models are non-Markovian, and require the development of new inference techniques.
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