GSEAplot: A Package for Customizing Gene Set Enrichment Analysis in R | Zendy

Sarah E. Innis | Zendy; Kelsie Reinaltt | Zendy; Mete Civelek | Zendy; Warren D. Anderson | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

GSEAplot: A Package for Customizing Gene Set Enrichment Analysis in R

Author(s) -

Sarah E. Innis,

Kelsie Reinaltt,

Mete Civelek,

Warren D. Anderson

Publication year - 2021

Publication title -

journal of computational biology

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.585

H-Index - 95

eISSN - 1557-8666

pISSN - 1066-5277

DOI - 10.1089/cmb.2020.0426

Subject(s) - r package , computer science , personalization , set (abstract data type) , workspace , computational biology , source code , bioconductor , genomics , pipeline (software) , programming language , gene , biology , genome , world wide web , artificial intelligence , genetics , robot

Gene Set Enrichment Analysis (GSEA) is used to identify differentially expressed gene sets that are enriched for annotated biological functions. The existing GSEA R code is not in the form of a flexible package with analysis and plotting customization options, and the results produced are not generated in the form of R objects. In this study, we introduce the GSEAplot R package with novel functionality for saving relevant information from the analysis to the current R workspace, and we introduce the ability to customize plots and databases. The GSEAplot package provides a novel utility that facilitates the implementation of GSEA R-based in genomics analysis pipelines.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research