Open AccessThaumatin protein predicted from oil palm and rubber using PHYRE2 and SWISS-MODEL software
Author(s) -
Rahmah Hayati,
Mohammad Basyuni,
L Lisnawita,
Erman Munir
Publication year - 2021
Publication title -
iop conference series. earth and environmental science
Language(s) - English
Resource type - Journals
eISSN - 1755-1307
pISSN - 1755-1315
DOI - 10.1088/1755-1315/713/1/012009
Subject(s) - thaumatin , homology modeling , palm oil , natural rubber , membrane , cytoplasm , palm , homology (biology) , biochemistry , chemistry , gene , biology , food science , organic chemistry , physics , quantum mechanics , enzyme
Thaumatin-like proteins play important roles in plant defense responses. The protein sequence of a thaumatin gene was found from the NCBI database and analyzed using PHYRE2 and SWISS-MODEL software. The oil palm showed that the total different protein modeling determines by SWISS-MODEL. In addition, the binding site predicted in oil palm has three model proteins CYS, GLN, and TYR using PHYRE 2 . Another case, distinct in rubber model protein which just has two kind proteins (THR and TYR). The image of the structural proteins revealed that c2ahnA differences were performed using PHYRE 2 . While, the 2ahn.1.A structure protein had the closest homology image effects in the oil palm and rubber using SWISS-MODEL. The extracellular-cytoplasmic from oil palm was constructed in 19-34 membranes. But different helix, an extracellular-cytoplasmic from rubber was constructed in 22-37 membranes (N-C terminal).