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Pattern recognition approach to nucleic acid sequences
Author(s) -
Seetharaman J.,
Srinivasan R.
Publication year - 1996
Publication title -
iubmb life
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.132
H-Index - 113
eISSN - 1521-6551
pISSN - 1521-6543
DOI - 10.1080/15216549600201743
Subject(s) - nucleic acid , base pair , pairing , transfer rna , rna , dna , intramolecular force , matrix (chemical analysis) , representation (politics) , computational biology , base (topology) , computer science , chemistry , genetics , biology , stereochemistry , mathematics , physics , gene , mathematical analysis , superconductivity , chromatography , quantum mechanics , politics , political science , law
A pattern recognition method through the two dimensional matrix representation of the nucleic acids sequence is developed. This approach of two dimensional plotting primarily enables to visualize all types of bonding between different bases in a RNA or DNA. The two dimensional matrix uses the capability of intramolecular Watson‐Crick type (A‐U and C‐G) and Wobble type (G‐U) base pairing. The method discusses both parallel and anti‐parallel stranded base pairing. The application of the method to tRNA is shown.