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A consolidated linkage map for rainbow trout ( Oncorhynchus mykiss )
Author(s) -
Nichols K. M.,
Young W. P.,
Danzmann R. G.,
Robison B. D.,
Rexroad C.,
Noakes M.,
Phillips R. B.,
Bentzen P.,
Spies I.,
Knudsen K.,
Allendorf F. W.,
Cunningham B. M.,
Brunelli J.,
Zhang H.,
Ristow S.,
Drew R.,
Brown K. H.,
Wheeler P. A.,
Thorgaard G. H.
Publication year - 2003
Publication title -
animal genetics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.756
H-Index - 81
eISSN - 1365-2052
pISSN - 0268-9146
DOI - 10.1046/j.1365-2052.2003.00957.x
Subject(s) - biology , rainbow trout , microsatellite , genetics , genetic linkage , synteny , amplified fragment length polymorphism , minisatellite , genetic marker , gene mapping , genome , evolutionary biology , chromosome , gene , fishery , genetic diversity , allele , population , sociology , fish <actinopterygii> , demography
Summary Androgenetic doubled haploid progeny produced from a cross between the Oregon State University and Arlee clonal rainbow trout ( Oncorhynchus mykiss ) lines, used for a previous published rainbow trout map, were used to update the map with the addition of more amplified fragment length polymorphic (AFLP) markers, microsatellites, type I and allozyme markers. We have added more than 900 markers, bringing the total number to 1359 genetic markers and the sex phenotype including 799 Eco RI AFLPs, 174 Pst I AFLPs, 226 microsatellites, 72 VNTR, 38 SINE markers, 29 known genes, 12 minisatellites, five RAPDs, and four allozymes. Thirty major linkage groups were identified. Synteny of linkage groups in our map with the outcrossed microsatellite map has been established for all except one linkage group in this doubled haploid cross. Putative homeologous relationships among linkage groups, resulting from the autotetraploid nature of the salmonid genome, have been revealed based on the placement of duplicated microsatellites and type I loci.