Open AccessGenome sequence and transcriptomic profiles of a marine bacterium, Pseudoalteromonas agarivorans Hao 2018
Author(s) -
Kai Shan,
Chunlei Wang,
Wenlin Liu,
Kai Liu,
Baolei Jia,
Lujiang Hao
Publication year - 2019
Publication title -
scientific data
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.565
H-Index - 64
ISSN - 2052-4463
DOI - 10.1038/s41597-019-0012-y
Subject(s) - pseudoalteromonas , biology , transcriptome , genome , whole genome sequencing , illumina dye sequencing , genetics , computational biology , dna sequencing , gene , 16s ribosomal rna , gene expression
Members of the marine genus Pseudoalteromonas have attracted great interest because of their ability to produce a large number of biologically active substances. Here, we report the complete genome sequence of Pseudoalteromonas agarivorans Hao 2018, a strain isolated from an abalone breeding environment, using second-generation Illumina and third-generation PacBio sequencing technologies. Illumina sequencing offers high quality and short reads, while PacBio technology generates long reads. The scaffolds of the two platforms were assembled to yield a complete genome sequence that included two circular chromosomes and one circular plasmid. Transcriptomic data for Pseudoalteromonas were not available. We therefore collected comprehensive RNA-seq data using Illumina sequencing technology from a fermentation culture of P. agarivorans Hao 2018. Researchers studying the evolution, environmental adaptations and biotechnological applications of Pseudoalteromonas may benefit from our genomic and transcriptomic data to analyze the function and expression of genes of interest.