Open AccessDesign principles for enhancing phase sensitivity and suppressing phase fluctuations simultaneously in biochemical oscillatory systems
Author(s) -
Chenyi Fei,
Yuansheng Cao,
Qi Ouyang,
Yuhai Tu
Publication year - 2018
Publication title -
nature communications
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 5.559
H-Index - 365
ISSN - 2041-1723
DOI - 10.1038/s41467-018-03826-4
Subject(s) - sensitivity (control systems) , phase (matter) , biological system , computer science , control theory (sociology) , materials science , physics , biology , electronic engineering , engineering , control (management) , artificial intelligence , quantum mechanics
Biological systems need to function accurately in the presence of strong noise and at the same time respond sensitively to subtle external cues. Here we study design principles in biochemical oscillatory circuits to achieve these two seemingly incompatible goals. We show that energy dissipation can enhance phase sensitivity linearly by driving the phase-amplitude coupling and increase timing accuracy by suppressing phase diffusion. Two general design principles in the key underlying reaction loop formed by two antiparallel pathways are found to optimize oscillation performance with a given energy budget: balancing the forward-to-backward flux ratio between the two pathways to reduce phase diffusion and maximizing the net flux of the phase-advancing pathway relative to that of the phase-retreating pathway to enhance phase sensitivity. Experimental evidences consistent with these design principles are found in the circadian clock of cyanobacteria. Future experiments to test the predicted dependence of phase sensitivity on energy dissipation are proposed.