Open AccessThe grapevine kinome: annotation, classification and expression patterns in developmental processes and stress responses
Author(s) -
Kaikai Zhu,
Xiaolong Wang,
Jinyi Liu,
Jun Tang,
Qunkang Cheng,
Jay Chen,
ZongMing Cheng
Publication year - 2018
Publication title -
horticulture research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.947
H-Index - 31
eISSN - 2662-6810
pISSN - 2052-7276
DOI - 10.1038/s41438-018-0027-0
Subject(s) - kinome , biology , segmental duplication , gene duplication , gene , tandem exon duplication , genetics , negative selection , genome , abiotic stress , annotation , kinase , computational biology , evolutionary biology , gene family
Protein kinases (PKs) have evolved as the largest family of molecular switches that regulate protein activities associated with almost all essential cellular functions. Only a fraction of plant PKs, however, have been functionally characterized even in model plant species. In the present study, the entire grapevine kinome was identified and annotated using the most recent version of the grapevine genome. A total of 1168 PK-encoding genes were identified and classified into 20 groups and 121 families, with the RLK-Pelle group being the largest, with 872 members. The 1168 kinase genes were unevenly distributed over all 19 chromosomes, and both tandem and segmental duplications contributed to the expansion of the grapevine kinome, especially of the RLK-Pelle group. Ka/Ks values indicated that most of the tandem and segmental duplication events were under purifying selection. The grapevine kinome families exhibited different expression patterns during plant development and in response to various stress treatments, with many being coexpressed. The comprehensive annotation of grapevine kinase genes, their patterns of expression and coexpression, and the related information facilitate a more complete understanding of the roles of various grapevine kinases in growth and development, responses to abiotic stress, and evolutionary history.