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Identification of human viral protein‐derived ligands recognized by individual MHCI‐restricted T‐cell receptors
Author(s) -
Szomolay Barbara,
Liu Jie,
Brown Paul E,
Miles John J,
Clement Mathew,
LlewellynLacey Sian,
Dolton Garry,
EkerucheMakinde Julia,
Lissina Anya,
Schauenburg Andrea J,
Sewell Andrew K,
Burrows Scott R,
Roederer Mario,
Price David A,
Wooldridge Linda,
Berg Hugo A
Publication year - 2016
Publication title -
immunology and cell biology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.999
H-Index - 104
eISSN - 1440-1711
pISSN - 0818-9641
DOI - 10.1038/icb.2016.12
Subject(s) - epitope , biology , t cell receptor , cd8 , major histocompatibility complex , peptide , virology , virus , computational biology , peptide library , receptor , peptide sequence , clone (java method) , t cell , antigen , immune system , immunology , genetics , gene , biochemistry
Evidence indicates that autoimmunity can be triggered by virus‐specific CD8 + T cells that crossreact with self‐derived peptide epitopes presented on the cell surface by major histocompatibility complex class I (MHCI) molecules. Identification of the associated viral pathogens is challenging because individual T‐cell receptors can potentially recognize up to a million different peptides. Here, we generate peptide length‐matched combinatorial peptide library (CPL) scan data for a panel of virus‐specific CD8 + T‐cell clones spanning different restriction elements and a range of epitope lengths. CPL scan data drove a protein database search limited to viruses that infect humans. Peptide sequences were ranked in order of likelihood of recognition. For all anti‐viral CD8 + T‐cell clones examined in this study, the index peptide was either the top‐ranked sequence or ranked as one of the most likely sequences to be recognized. Thus, we demonstrate that anti‐viral CD8 + T‐cell clones are highly focused on their index peptide sequence and that ‘CPL‐driven database searching’ can be used to identify the inciting virus‐derived epitope for a given CD8 + T‐cell clone. Moreover, to augment access to CPL‐driven database searching, we have created a publicly accessible webtool. Application of these methodologies in the clinical setting may clarify the role of viral pathogens in the etiology of autoimmune diseases.