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Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin‐binding entities
Author(s) -
Hjerpe Roland,
Aillet Fabienne,
LopitzOtsoa Fernando,
Lang Valerie,
England Patrick,
Rodriguez Manuel S
Publication year - 2009
Publication title -
embo reports
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 4.584
H-Index - 184
eISSN - 1469-3178
pISSN - 1469-221X
DOI - 10.1038/embor.2009.192
Subject(s) - ubiquitin , proteasome , deubiquitinating enzyme , tandem affinity purification , biochemistry , protease , ubiquitins , function (biology) , microbiology and biotechnology , chemistry , biology , ubiquitin ligase , enzyme , affinity chromatography , gene
Post‐translational modification with ubiquitin is one of the most important mechanisms in the regulation of protein stability and function. However, the high reversibility of this modification is the main obstacle for the isolation and characterization of ubiquitylated proteins. To overcome this problem, we have developed tandem‐repeated ubiquitin‐binding entities (TUBEs) based on ubiquitin‐associated (UBA) domains. TUBEs recognize tetra‐ubiquitin with a markedly higher affinity than single UBA domains, allowing poly‐ubiquitylated proteins to be efficiently purified from cell extracts in native conditions. More significant is the fact that TUBEs protect poly‐ubiquitin‐conjugated proteins, such as p53 and IκBα, both from proteasomal degradation and de‐ubiquitylating activity present in cell extracts, as well as from existing proteasome and cysteine protease inhibitors. Therefore, these new ‘molecular traps’ should become valuable tools for purifying endogenous poly‐ubiquitylated proteins, thus contributing to a better characterization of many essential functions regulated by these post‐translational modifications.