Open AccessStructure–Reactivity Effects on Intrinsic Primary Kinetic Isotope Effects for Hydride Transfer Catalyzed by Glycerol-3-phosphate Dehydrogenase
Author(s) -
Archie C. Reyes,
Tina L. Amyes,
John P. Richard
Publication year - 2016
Publication title -
journal of the american chemical society
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 7.115
H-Index - 612
eISSN - 1520-5126
pISSN - 0002-7863
DOI - 10.1021/jacs.6b07028
Subject(s) - chemistry , kinetic isotope effect , dihydroxyacetone phosphate , enzyme kinetics , hydride , glycolaldehyde , reactivity (psychology) , dehydrogenase , catalysis , stereochemistry , ligand (biochemistry) , active site , enzyme , medicinal chemistry , deuterium , hydrogen , organic chemistry , biochemistry , medicine , physics , alternative medicine , receptor , quantum mechanics , pathology
Primary deuterium kinetic isotope effects (1°DKIE) on (k cat /K GA , M -1 s -1 ) for dianion (X 2- ) activated hydride transfer from NADL to glycolaldehyde (GA) catalyzed by glycerol-3-phosphate dehydrogenase were determined over a 2100-fold range of enzyme reactivity: (X 2- , 1°DKIE); FPO 3 2- , 2.8 ± 0.1; HPO 3 2- , 2.5 ± 0.1; SO 4 2- , 2.8 ± 0.2; HOPO 3 2- , 2.5 ± 0.1; S 2 O 3 2- , 2.9 ± 0.1; unactivated; 2.4 ± 0.2. Similar 1°DKIEs were determined for k cat . The observed 1°DKIEs are essentially independent of changes in enzyme reactivity with changing dianion activator. The results are consistent with (i) fast and reversible ligand binding; (ii) the conclusion that the observed 1°DKIEs are equal to the intrinsic 1°DKIE on hydride transfer from NADL to GA; (iii) similar intrinsic 1°DKIEs on GPDH-catalyzed reduction of the substrate pieces and the whole physiological substrate dihydroxyacetone phosphate. The ground-state binding interactions for different X 2- are similar, but there are large differences in the transition state interactions for different X 2- . The changes in transition state binding interactions are expressed as changes in k cat and are proposed to represent changes in stabilization of the active closed form of GPDH. The 1°DKIEs are much smaller than observed for enzyme-catalyzed hydrogen transfer that occurs mainly by quantum-mechanical tunneling.