Open AccesspH- and Calcium-Dependent Aromatic Network in the SARS-CoV-2 Envelope Protein
Author(s) -
João MedeirosSilva,
Noah H. Somberg,
Harrison K. Wang,
Matthew J. McKay,
Venkata S. Mandala,
Aurelio J. Dregni,
Mei Hong
Publication year - 2022
Publication title -
journal of the american chemical society
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 7.115
H-Index - 612
eISSN - 1520-5126
pISSN - 0002-7863
DOI - 10.1021/jacs.2c00973
Subject(s) - chemistry , nuclear magnetic resonance spectroscopy , solid state nuclear magnetic resonance , biophysics , endoplasmic reticulum , population , lipid bilayer , membrane protein , membrane , calcium , crystallography , aromatic amino acids , viral envelope , stereochemistry , biochemistry , amino acid , organic chemistry , nuclear magnetic resonance , glycoprotein , physics , demography , sociology , biology
The envelope (E) protein of the SARS-CoV-2 virus is a membrane-bound viroporin that conducts cations across the endoplasmic reticulum Golgi intermediate compartment (ERGIC) membrane of the host cell to cause virus pathogenicity. The structure of the closed state of the E transmembrane (TM) domain, ETM, was recently determined using solid-state NMR spectroscopy. However, how the channel pore opens to mediate cation transport is unclear. Here, we use 13 C and 19 F solid-state NMR spectroscopy to investigate the conformation and dynamics of ETM at acidic pH and in the presence of calcium ions, which mimic the ERGIC and lysosomal environment experienced by the E protein in the cell. Acidic pH and calcium ions increased the conformational disorder of the N- and C-terminal residues and also increased the water accessibility of the protein, indicating that the pore lumen has become more spacious. ETM contains three regularly spaced phenylalanine (Phe) residues in the center of the peptide. 19 F NMR spectra of para-fluorinated Phe20 and Phe26 indicate that both residues exhibit two sidechain conformations, which coexist within each channel. These two Phe conformations differ in their water accessibility, lipid contact, and dynamics. Channel opening by acidic pH and Ca 2+ increases the population of the dynamic lipid-facing conformation. These results suggest an intricate aromatic network that regulates the opening of the ETM channel pore. This aromatic network may be a target for E inhibitors against SARS-CoV-2 and related coronaviruses.