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Weak Shape Anisotropy Leads to a Nonmonotonic Contribution to Crowding, Impacting Protein Dynamics under Physiologically Relevant Conditions
Author(s) -
Jin Suk Myung,
Felix RoosenRunge,
Roland G. Winkler,
Gerhard Gompper,
Peter Schurtenberger,
Anna Stradner
Publication year - 2018
Publication title -
the journal of physical chemistry b
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.864
H-Index - 392
eISSN - 1520-6106
pISSN - 1520-5207
DOI - 10.1021/acs.jpcb.8b07901
Subject(s) - anisotropy , soft matter , crowding , diffusion , statistical physics , relaxation (psychology) , molecular dynamics , particle (ecology) , physics , dynamics (music) , atomic packing factor , range (aeronautics) , isotropy , chemical physics , classical mechanics , materials science , chemistry , thermodynamics , optics , colloid , psychology , social psychology , oceanography , quantum mechanics , neuroscience , acoustics , composite material , biology , geology , nuclear magnetic resonance
The effect of a nonspherical particle shape on the dynamics in crowded solutions presents a significant challenge for a comprehensive understanding of interaction and structural relaxation in biological and soft matter. We report that small deviations from a spherical shape induce a nonmonotonic contribution to the crowding effect on the short-time cage diffusion compared with spherical systems, using molecular dynamics simulations with mesoscale hydrodynamics of a multiparticle collision dynamics fluid in semidilute systems with volume fractions smaller than 0.35. We show that the nonmonotonic effect due to anisotropy is caused by the combination of a reduced relative mobility over the entire concentration range and a looser and less homogeneous cage packing of nonspherical particles. Our finding stresses that nonsphericity induces new complexity, which cannot be accounted for in effective sphere models, and is of great interest in applications such as formulations as well as for the fundamental understanding of soft matter in general and crowding effects in living cells in particular.

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