Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution
Author(s) -
Valeria D’Annibale,
Alessandro Nicola Nardi,
Andrea Amadei,
Marco D’Abramo
Publication year - 2021
Publication title -
journal of chemical theory and computation
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.001
H-Index - 185
eISSN - 1549-9626
pISSN - 1549-9618
DOI - 10.1021/acs.jctc.0c00728
Subject(s) - nucleobase , nucleic acid , ionization energy , nucleotide , ionization , aqueous solution , x ray photoelectron spectroscopy , chemistry , reduction (mathematics) , gas phase , chemical physics , oxidation state , computational chemistry , phosphate , characterization (materials science) , combinatorial chemistry , dna , materials science , nanotechnology , ion , physics , organic chemistry , biochemistry , metal , geometry , mathematics , nuclear magnetic resonance , gene
Here, we present the theoretical–computational modeling of the oxidation properties of four DNA nucleosides and nucleotides and a set of dinucleotides in solutions. Our estimates of the vertical ionization energies and reduction potentials, close to the corresponding experimental data, show that an accurate calculation of the molecular electronic properties in solutions requires a proper treatment of the effect of the environment. In particular, we found that the effect of the environment is to stabilize the oxidized state of the nucleobases resulting in a remarkable reduction—up to 6.6 eV—of the energy with respect to the gas phase. Our estimates of the aqueous and gas-phase vertical ionization energies, in good agreement with photoelectron spectroscopy experiments, also show that the effect on the reduction potential of the phosphate group and of the additional nucleotide in dinucleotides is rather limited.
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