Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish
Author(s) -
Kathrin Reichwald,
A. Petzold,
Philipp Koch,
Bryan Downie,
Nils Hartmann,
Stefan Pietsch,
Mario Baumgart,
Domitille Chalopin,
Marius Felder,
Martin Bens,
Arne Sahm,
Karol Szafranski,
Stefan Taudien,
Marco Groth,
Ivan Arisi,
Anja Weise,
Samarth Bhatt,
Virag Sharma,
Johann M. Kraus,
Florian Schmid,
Stefan Priebe,
Thomas Liehr,
Matthias Görlach,
Manuel E. Than,
Michael Hiller,
Hans A. Kestler,
JeanNicolas Volff,
Manfred Schartl,
Alessandro Cellerino,
Christoph Englert,
Matthias Platzer
Publication year - 2015
Publication title -
cell
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 26.304
H-Index - 776
eISSN - 1097-4172
pISSN - 0092-8674
DOI - 10.1016/j.cell.2015.10.071
Subject(s) - biology , fish <actinopterygii> , evolutionary biology , genome , chromosome , genetics , gene , fishery
The killifish Nothobranchius furzeri is the shortest-lived vertebrate that can be bred in the laboratory. Its rapid growth, early sexual maturation, fast aging, and arrested embryonic development (diapause) make it an attractive model organism in biomedical research. Here, we report a draft sequence of its genome that allowed us to uncover an intra-species Y chromosome polymorphism representing-in real time-different stages of sex chromosome formation that display features of early mammalian XY evolution "in action." Our data suggest that gdf6Y, encoding a TGF-β family growth factor, is the master sex-determining gene in N. furzeri. Moreover, we observed genomic clustering of aging-related genes, identified genes under positive selection, and revealed significant similarities of gene expression profiles between diapause and aging, particularly for genes controlling cell cycle and translation. The annotated genome sequence is provided as an online resource (http://www.nothobranchius.info/NFINgb).
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