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Orthogonal‐field‐alternation gel electrophoresis banding patterns of DNA from yeasts
Author(s) -
De Jonge Peter,
De Jongh Francien C. M.,
Meijers Robert,
Steensma H. Yde,
Scheffers W. Alexander
Publication year - 1986
Publication title -
yeast
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.923
H-Index - 102
eISSN - 1097-0061
pISSN - 0749-503X
DOI - 10.1002/yea.320020307
Subject(s) - biology , kluyveromyces , yeast , rhodotorula , saccharomyces , dna , geotrichum , saccharomyces cerevisiae , genetics , karyotype , ploidy , kluyveromyces lactis , chromosome , microbiology and biotechnology , gene
Chromosomal DNAs from various yeast species were separated by orthogonal‐field‐alternation gel electrophoresis (OFAGE). To this end we developed a spheroplasting and lysis method to obtain intact DNA from both ascomycetous and basidiomycetous yeasts. The OFAGE banding patterns of 22 ascomycetous and four basidiomycetous yeast strains were compared. The strains represented species from the genera: Brettanomyces , Candida , Croococcus , Filobasidiella , Geotrichum , Hansenula , Kluyveromyces , Pachysolen , Pichia , Rhodosporidium , Rhodotorula , Saccharomyces , Saccharomycodes , Saccharomycopis , Schizosaccharomyces and Zygosaccharomyces . Variations occurred in the number of bands and their positions in the gel, not only among strains of different genera but also among species from the same genus and even between varieties of the same species. The ascomycetous yeasts, with the exeption of Saccharomyces cerevisiae , only showed one to five bands of DNA larger than 1000 kilobase pairs (kb) in general none smaller. The paterns of the four basidiomycetous yeasts revealed also a few large DNA bands but in addition one to six bands ranging in size from 500 to 1000 kb, with the exception of a single smaller chromosome in Rhodotorula mucilaginosa. From the OFAGE banding patterns of strains studied here it appears that in Saach. cerevisiae the partitioning of DNA over chromosomes in unique. But rather than the large number of chromosomes, the presence of four chromosomes with less than 500 kb of DNA is characteristic for Sacch. cerevisiae .