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Synthetic Image Rendering Solves Annotation Problem in Deep Learning Nanoparticle Segmentation
Author(s) -
Mill Leonid,
Wolff David,
Gerrits Nele,
Philipp Patrick,
Kling Lasse,
Vollnhals Florian,
Ignatenko Andrew,
Jaremenko Christian,
Huang Yixing,
De Castro Olivier,
Audinot JeanNicolas,
Nelissen Inge,
Wirtz Tom,
Maier Andreas,
Christiansen Silke
Publication year - 2021
Publication title -
small methods
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 4.66
H-Index - 46
ISSN - 2366-9608
DOI - 10.1002/smtd.202100223
Subject(s) - rendering (computer graphics) , computer science , deep learning , artificial intelligence , segmentation , object detection , software , artificial neural network , machine learning , deep neural networks , programming language
Nanoparticles occur in various environments as a consequence of man‐made processes, which raises concerns about their impact on the environment and human health. To allow for proper risk assessment, a precise and statistically relevant analysis of particle characteristics (such as size, shape, and composition) is required that would greatly benefit from automated image analysis procedures. While deep learning shows impressive results in object detection tasks, its applicability is limited by the amount of representative, experimentally collected and manually annotated training data. Here, an elegant, flexible, and versatile method to bypass this costly and tedious data acquisition process is presented. It shows that using a rendering software allows to generate realistic, synthetic training data to train a state‐of‐the art deep neural network. Using this approach, a segmentation accuracy can be derived that is comparable to man‐made annotations for toxicologically relevant metal‐oxide nanoparticle ensembles which were chosen as examples. The presented study paves the way toward the use of deep learning for automated, high‐throughput particle detection in a variety of imaging techniques such as in microscopies and spectroscopies, for a wide range of applications, including the detection of micro‐ and nanoplastic particles in water and tissue samples.

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