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Metagenome Mining: A Sequence Directed Strategy for the Retrieval of Enzymes for Biocatalysis
Author(s) -
Jeffries Jack W. E.,
Dawson Natalie,
Orengo Christine,
Moody Thomas S.,
Quinn Derek J.,
Hailes Helen C.,
Ward John M.
Publication year - 2016
Publication title -
chemistryselect
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.437
H-Index - 34
ISSN - 2365-6549
DOI - 10.1002/slct.201600515
Subject(s) - metagenomics , in silico , computational biology , contig , biology , sequence (biology) , computer science , genome , genetics , gene
Biocatalytic reactions are increasingly being used as a sustainable strategy in organic synthesis and it is recognised that there is need for new enzyme discovery. To establish the utility and versatility of a metagenomics approach, metagenomic DNA extracted from the oral cavity was sequenced and used to create an in silico contig library. This enables individual open reading frames, operons or all the enzymes of a particular family to be identified and then retrieved from the original DNA by PCR. As proof of principle a lactate dehydrogenase, a malate dehydrogenase and transketolases were identified in silico , successfully cloned and assayed. This new enzyme retrieval sequence directed method gives constructive access to metagenomic diversity and importantly improves on the low hit rate experienced when using conventional metagenomic screens.