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Novel method for analyzing proteome
Author(s) -
Liao Bo,
Luo Jiawei,
Li Renfa,
Zhu Wen
Publication year - 2006
Publication title -
international journal of quantum chemistry
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.484
H-Index - 105
eISSN - 1097-461X
pISSN - 0020-7608
DOI - 10.1002/qua.21287
Subject(s) - proteome , tree (set theory) , phylogenetic tree , representation (politics) , construct (python library) , similarity (geometry) , computational biology , computer science , distance matrix , sequence (biology) , matrix representation , measure (data warehouse) , theoretical computer science , chemistry , biology , algorithm , bioinformatics , mathematics , artificial intelligence , data mining , combinatorics , genetics , group (periodic table) , gene , politics , political science , law , image (mathematics) , programming language , organic chemistry
We propose a 6D representation of protein sequences consisting of 20 amino acids. Based on this 6D representation, we propose a proteome distance measure for constructing phylogenic tree. And we make use of the corresponding similarity matrix to construct phylogenic tree. The examination of phylogenic tree belong to 30 mitochondrial sequence illustrates the utility of our approach. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007