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Mechanistic studies of the apical sodium‐dependent bile acid transporter
Author(s) -
Alhadeff Raphael,
Ganoth Assaf,
Arkin Isaiah T.
Publication year - 2015
Publication title -
proteins: structure, function, and bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.699
H-Index - 191
eISSN - 1097-0134
pISSN - 0887-3585
DOI - 10.1002/prot.24796
Subject(s) - transporter , bile acid , symporter , chemistry , biophysics , biochemistry , biology , gene
In mammals, the apical sodium‐dependent bile acid transporter (ASBT) is responsible for the reuptake of bile acid from the intestine, thus recycling bile acid that is secreted from the gallbladder, for the purpose of digestion. As bile acid is synthesized from cholesterol, ASBT inhibition could have important implications in regulation of cholesterol levels in the blood. We report on a simulation study of the recently resolved structures of the inward‐facing ASBT from Neisseria meningitidis and from Yersinia frederiksenii , as well as of an ASBT variant from Yersinia frederiksenii suggested to be in the outward‐facing conformation. Classical and steered atomistic simulations and comprehensive potential of mean force analyses of ASBT, both in the absence and presence of ions and substrate, allow us to characterize and gain structural insights into the Na + binding sites and propose a mechanistic model for the transport cycle. In particular, we investigate structural features of the ion translocation pathway, and suggest a third putative Na + binding site. Our study sheds light on the structure–function relationship of bacterial ASBT and may promote a deeper understanding of transport mechanism altogether. Proteins 2015; 83:1107–1117. © 2015 Wiley Periodicals, Inc.