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New tools and expanded data analysis capabilities at the protein structure prediction center
Author(s) -
Kryshtafovych Andriy,
Prlic Andreas,
Dmytriv Zinoviy,
Daniluk Pawel,
Milostan Maciej,
Eyrich Volker,
Hubbard Tim,
Fidelis Krzysztof
Publication year - 2007
Publication title -
proteins: structure, function, and bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.699
H-Index - 191
eISSN - 1097-0134
pISSN - 0887-3585
DOI - 10.1002/prot.21653
Subject(s) - casp , computer science , java , template , protein structure prediction , visualization , software , software engineering , data mining , data science , programming language , protein structure , physics , nuclear magnetic resonance
We outline the main tasks performed by the Protein Structure Prediction Center in support of the CASP7 experiment and provide a brief review of the major measures used in the automatic evaluation of predictions. We describe in more detail the software developed to facilitate analysis of modeling success over and beyond the available templates and the adopted Java-based tool enabling visualization of multiple structural superpositions between target and several models/templates. We also give an overview of the CASP infrastructure provided by the Center and discuss the organization of the results web pages available through http://predictioncenter.org.