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Molecular simulations reveal a new entry site in quercetin 2,3‐dioxygenase. A pathway for dioxygen?
Author(s) -
Fiorucci Sébastien,
Golebiowski Jérôme,
CabrolBass Daniel,
Antonczak Serge
Publication year - 2006
Publication title -
proteins: structure, function, and bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.699
H-Index - 191
eISSN - 1097-0134
pISSN - 0887-3585
DOI - 10.1002/prot.21042
Subject(s) - dioxygenase , molecular dynamics , chemistry , active site , quercetin , stereochemistry , enzyme , biophysics , computational chemistry , biochemistry , biology , antioxidant
Molecular dynamics simulations performed on quercetin 2,3‐dioxygenase have shown the existence of a channel linking the bulk solvent and the cavity of the enzyme. Although much is known about the the oxygenolysis reaction catalyzed by this enzyme, the way dioxygen enters the active site has not been firmly established. The size, orientation and hydrophobic character of this channel suggests that it could provide an entrance for molecular dioxygen into the cavity. Free energy calculations show that such a process is likely to occur. Proteins 2006. © 2006 Wiley‐Liss, Inc.