Premium
Structure of a novel thermostable GH51 α‐L‐arabinofuranosidase from Thermotoga petrophila RKU‐1
Author(s) -
Souza Tatiana A.C.B.,
Santos Camila R.,
Souza Angelica R.,
Oldiges Daiane P.,
Ruller Roberto,
Prade Rolf A.,
Squina Fabio M.,
Murakami Mario T.
Publication year - 2011
Publication title -
protein science
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.353
H-Index - 175
eISSN - 1469-896X
pISSN - 0961-8368
DOI - 10.1002/pro.693
Subject(s) - random hexamer , chemistry , crystallography , thermotoga maritima , bioconversion , protein structure , stereochemistry , biochemistry , escherichia coli , fermentation , gene
α‐ L ‐arabinofuranosidases (EC 3.2.1.55) participate in the degradation of a variety of L ‐arabinose‐containing polysaccharides and interact synergistically with other hemicellulases in the production of oligosaccharides and bioconversion of lignocellulosic biomass into biofuels. In this work, the structure of a novel thermostable family 51 (GH51) α‐ L ‐arabinofuranosidase from Thermotoga petrophila RKU‐1 (TpAraF) was determined at 3.1 Å resolution. The TpAraF tertiary structure consists of an (α/β)‐barrel catalytic core associated with a C‐terminal β‐sandwich domain, which is stabilized by hydrophobic contacts. In contrast to other structurally characterized GH51 AraFs, the accessory domain of TpAraF is intimately linked to the active site by a long β‐hairpin motif, which modifies the catalytic cavity in shape and volume. Sequence and structural analyses indicate that this motif is unique to Thermotoga AraFs. Small angle X‐ray scattering investigation showed that TpAraF assembles as a hexamer in solution and is preserved at the optimum catalytic temperature, 65°C, suggesting functional significance. Crystal packing analysis shows that the biological hexamer encompasses a dimer of trimers and the multiple oligomeric interfaces are predominantly fashioned by polar and electrostatic contacts.