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PDBsum: Structural summaries of PDB entries
Author(s) -
Laskowski Roman A.,
Jabłońska Jagoda,
Pravda Lukáš,
Vařeková Radka Svobodová,
Thornton Janet M.
Publication year - 2018
Publication title -
protein science
Language(s) - Uncategorized
Resource type - Journals
SCImago Journal Rank - 3.353
H-Index - 175
eISSN - 1469-896X
pISSN - 0961-8368
DOI - 10.1002/pro.3289
Subject(s) - protein data bank (rcsb pdb) , protein data bank , javascript , computer science , upload , information retrieval , structural bioinformatics , web server , world wide web , database , protein structure , biology , the internet , biochemistry
PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and protein-DNA interactions, PROCHECK analyses of structural quality, and many others. The 3D structures can be viewed interactively in RasMol, PyMOL, and a JavaScript viewer called 3Dmol.js. Users can upload their own PDB files and obtain a set of password-protected PDBsum analyses for each. The server is freely accessible to all at: http://www.ebi.ac.uk/pdbsum.