PDBsum: Structural summaries of PDB entries | Zendy

Laskowski Roman A. | Zendy; Jabłońska Jagoda | Zendy; Pravda Lukáš | Zendy; Vařeková Radka Svobodová | Zendy; Thornton Janet M. | Zendy

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PDBsum: Structural summaries of PDB entries

Author(s) -

Laskowski Roman A.,

Jabłońska Jagoda,

Pravda Lukáš,

Vařeková Radka Svobodová,

Thornton Janet M.

Publication year - 2018

Publication title -

protein science

Language(s) - Uncategorized

Resource type - Journals

SCImago Journal Rank - 3.353

H-Index - 175

eISSN - 1469-896X

pISSN - 0961-8368

DOI - 10.1002/pro.3289

Subject(s) - protein data bank (rcsb pdb) , protein data bank , javascript , computer science , upload , information retrieval , structural bioinformatics , web server , world wide web , database , protein structure , biology , the internet , biochemistry

PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and protein-DNA interactions, PROCHECK analyses of structural quality, and many others. The 3D structures can be viewed interactively in RasMol, PyMOL, and a JavaScript viewer called 3Dmol.js. Users can upload their own PDB files and obtain a set of password-protected PDBsum analyses for each. The server is freely accessible to all at: http://www.ebi.ac.uk/pdbsum.

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