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Proteome Profiles of Head Kidney and Spleen of Rainbow Trout ( Oncorhynchus Mykiss )
Author(s) -
Kumar Gokhlesh,
Hummel Karin,
RazzaziFazeli Ebrahim,
ElMatbouli Mansour
Publication year - 2018
Publication title -
proteomics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.26
H-Index - 167
eISSN - 1615-9861
pISSN - 1615-9853
DOI - 10.1002/pmic.201800101
Subject(s) - rainbow trout , proteome , biology , spleen , trout , computational biology , kidney , microbiology and biotechnology , immunology , fish <actinopterygii> , bioinformatics , fishery , genetics
The head kidney and spleen are major lymphoid organs of the teleost fish. The authors identify proteome profiles of head kidney and spleen of rainbow trout ( Oncorhynchus mykiss ) using a shotgun proteomic approach. Gene ontology annotation of proteins is predicted using bioinformatic tools. This study represents detailed proteome profiles of head kidney and spleen of rainbow trout, with a total of 3241 and 2542 proteins identified, respectively. It is found that lymphoid organs are equipped with a variety of functional proteins related to defense, receptor, signal transduction, antioxidant, cytoskeleton, transport, binding, and metabolic processes. The identified proteome profiles will serve as a template for understanding lymphoid organ functions in salmonids and will increase the amount of spectra information of rainbow trout proteins in the public data repository PRIDE. This data can be accessed via ProteomeXchange with identifiers PXD008473 and PXD008478.