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A guide for integration of proteomic data standards into laboratory workflows
Author(s) -
MedinaAu J. Alberto,
Krishna Ritesh,
Ghali Fawaz,
Albar Juan P.,
Jones Andrew J.
Publication year - 2013
Publication title -
proteomics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.26
H-Index - 167
eISSN - 1615-9861
pISSN - 1615-9853
DOI - 10.1002/pmic.201200268
Subject(s) - workflow , computer science , software , data exchange , data science , data integration , software engineering , database , programming language
The development of the HUPO‐Proteomics Standards Initiative standard data formats and Minimum Information About a Proteomics Experiment guidelines facilitate coordination within the scientific community. The data standards provide a framework to exchange and share data regardless of the source instrument or software. Nevertheless there remains a view that Proteomics Standards Initiative standards are challenging to use and integrate into routine laboratory pipelines. In this article, we review the tools available for integrating the different data standards and building compliant software. These tools are focused on a range of different data types and support different scenarios, intended for software developers or end users, allowing the standards to be used in a straightforward manner.