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jmzML, an open‐source Java API for mzML, the PSI standard for MS data
Author(s) -
Côté Richard G.,
Reisinger Florian,
Martens Lennart
Publication year - 2010
Publication title -
proteomics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.26
H-Index - 167
eISSN - 1615-9861
pISSN - 1615-9853
DOI - 10.1002/pmic.200900719
Subject(s) - computer science , xpath , programming language , java , xml , java api for xml based rpc , streaming xml , simple api for xml , xml database , parsing , database , xml signature , java annotation , operating system , efficient xml interchange , java applet
We here present jmzML, a Java API for the Proteomics Standards Initiative mzML data standard. Based on the Java Architecture for XML Binding and XPath-based XML indexer random-access XML parser, jmzML can handle arbitrarily large files in minimal memory, allowing easy and efficient processing of mzML files using the Java programming language. jmzML also automatically resolves internal XML references on-the-fly. The library (which includes a viewer) can be downloaded from http://jmzml.googlecode.com.