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Methods for the detection and analysis of protein–protein interactions
Author(s) -
Berggård Tord,
Linse Sara,
James Peter
Publication year - 2007
Publication title -
proteomics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.26
H-Index - 167
eISSN - 1615-9861
pISSN - 1615-9853
DOI - 10.1002/pmic.200700131
Subject(s) - immunoprecipitation , protein–protein interaction , colocalization , surface plasmon resonance , computational biology , protein g , protein detection , biology , chemistry , microbiology and biotechnology , biochemistry , nanotechnology , antibody , genetics , gene , materials science , nanoparticle
A large number of methods have been developed over the years to study protein–protein interactions. Many of these techniques are now available to the nonspecialist researcher thanks to new affordable instruments and/or resource centres. A typical protein–protein interaction study usually starts with an initial screen for novel binding partners. We start this review by describing three techniques that can be used for this purpose: (i) affinity‐tagged proteins (ii) the two‐hybrid system and (iii) some quantitative proteomic techniques that can be used in combination with, e.g. , affinity chromatography and coimmunoprecipitation for screening of protein–protein interactions. We then describe some public protein–protein interaction databases that can be searched to identify previously reported interactions for a given bait protein. Four strategies for validation of protein–protein interactions are presented: confocal microscopy for intracellular colocalization of proteins, coimmunoprecipitation, surface plasmon resonance (SPR) and spectroscopic studies. Throughout the review we focus particularly on the advantages and limitations of each method.