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Family‐based and population‐based association studies validate PTPRD as a risk factor for restless legs syndrome
Author(s) -
Yang Qinbo,
Li Lin,
Yang Rong,
Shen GongQing,
Chen Qiuyun,
FoldvarySchaefer Nancy,
Ondo William G.,
Wang Qing Kenneth
Publication year - 2011
Publication title -
movement disorders
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.352
H-Index - 198
eISSN - 1531-8257
pISSN - 0885-3185
DOI - 10.1002/mds.23459
Subject(s) - genetics , genetic association , linkage disequilibrium , genome wide association study , single nucleotide polymorphism , snp , allele , biology , locus (genetics) , exon , population , odds ratio , genotype , case control study , gene , medicine , environmental health
Objective: We previously mapped a genetic locus for restless legs syndrome (RLS) to chromosome 9p22‐24 ( RLS3 ) and a later genome‐wide association study (GWAS) implicated the PTPRD gene at the RLS3 l ocus as a susceptibility gene for RLS. However, from the standpoint of genetics, the GWAS association needs to be validated by independent studies. In this study, we used both family‐based and population‐based association studies to assess the association between PTPRD and RLS in an American Caucasian population. Methods: We genotyped two intronic SNPs rs1975197 and rs4626664 in PTPRD in 144 family members from 15 families and a case control cohort of 189 patients and 560 controls. Direct DNA sequence analysis was used to screen coding exons and exon‐intron boundaries of PTPRD for rare mutations. Results: A family‐based sibling transmission disequilibrium test showed association of RLS with SNP rs1975197 ( P = 0.015), but not with rs4626664 ( P = 0.622). The association with rs1975197 was significantly replicated by a population‐based case control association study (allelic P = 0.0004, odds ratio = 1.68; genotypic P = 0.0013 and 0.0003 for an additive and dominant model, respectively). One rare p.E1639D variant was identified in exon 39 in kindred RLS40005. The rare D1639 allele did not co‐segregate with RLS in the family, suggesting that p.E1639D variant is not a causative mutation. Conclusions: This represents the first independent study to validate the association between PTPRD variants and RLS. Both family‐based and population‐based association studies suggest that PTPRD variant rs1975197 confers risk of RLS. © 2011 Movement Disorder Society