
Experimental approaches to identify small RNA s and their diverse roles in bacteria – what we have learnt in one decade of MicA research
Author(s) -
Van Puyvelde Sandra,
Vanderleyden Jozef,
De Keersmaecker Sigrid C. J.
Publication year - 2015
Publication title -
microbiologyopen
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.881
H-Index - 36
ISSN - 2045-8827
DOI - 10.1002/mbo3.263
Subject(s) - function (biology) , identification (biology) , computational biology , biology , rna , transfer rna , mica , gene , genetics , ecology , paleontology
Nowadays the identification of small RNA s ( sRNA s) and characterization of their role within regulatory networks takes a prominent place in deciphering complex bacterial phenotypes. Compared to the study of other components of bacterial cells, this is a relatively new but fast‐growing research field. Although reports on new sRNA s appear regularly, some sRNA s are already subject of research for a longer time. One of such sRNA s is MicA, a sRNA best described for its role in outer membrane remodeling, but probably having a much broader function than anticipated. An overview of what we have learnt from MicA led to the conclusion that even for this well‐described sRNA , we still do not have the overall picture. More general, the story of MicA might become an experimental lead for unraveling the many sRNA s with unknown functions. In this review, three important topics in the sRNA field are covered, exemplified from the perspective of MicA: (i) identification of new sRNA s, (ii) target identification and unraveling the biological function, (iii) structural analysis. The complex mechanisms of action of MicA deliver some original insights in the sRNA field which includes the existence of dimer formation or simultaneous cis and trans regulation, and might further inspire the understanding of the function of other sRNA s.