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DMSO as a mobile phase additive enhances detection of ubiquitination sites by nano‐ LC‐ESI‐MS/MS
Author(s) -
Doellinger Joerg,
Grossegesse Marica,
Nitsche Andreas,
Lasch Peter
Publication year - 2018
Publication title -
journal of mass spectrometry
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.475
H-Index - 121
eISSN - 1096-9888
pISSN - 1076-5174
DOI - 10.1002/jms.4049
Subject(s) - chemistry , ubiquitin , acetylation , proteome , peptide , tandem mass spectrometry , phosphorylation , mass spectrometry , chromatography , biochemistry , gene
Large‐scale detection of ubiquitination sites in whole cell proteomes using nano–liquid chromatography coupled to tandem mass spectrometry is a well‐established technique that has deepened the understanding of protein degradation processes in eukaryotic cells. Ubiquitination sites are usually identified by detection of Lys‐ɛ‐Gly‐Gly (K‐ɛ‐GG)‐remnant peptides, which are generated by tryptic digestion of proteomes. We show in this application note that dimethyl sulfoxide addition to the liquid chromatography mobile phase enhances identification rates of K‐ɛ‐GG peptides by more than 100% due to an increase of peptide signal intensities. The gain in the number of ubiquitination site identifications exceeds by far the gain that has been published for other posttranslational modifications, namely, phosphorylation and acetylation.