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Integration of expression quantitative trait loci and pleiotropy identifies a novel psoriasis susceptibility gene, PTPN1
Author(s) -
Yin Xianyong,
Lin Yuan,
Shen Changbing,
Wang Ling,
Zuo Xianbo,
Zheng Xiaodong,
Yang Sen,
Liu Jianjun,
Wilhelmsen Kirk C.,
Zhang Xuejun
Publication year - 2017
Publication title -
the journal of gene medicine
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.689
H-Index - 91
eISSN - 1521-2254
pISSN - 1099-498X
DOI - 10.1002/jgm.2939
Subject(s) - pleiotropy , quantitative trait locus , psoriasis , expression quantitative trait loci , genetic architecture , schizophrenia (object oriented programming) , genome wide association study , biology , genetics , genetic association , trait , phenotype , gene , medicine , immunology , single nucleotide polymorphism , genotype , psychiatry , programming language , computer science
Abstract Background Psoriasis is a common inflammatory skin disease, whereas schizophrenia is a psychiatric disorder with substantial comorbidity. Although these two disorders manifest with apparently unrelated phenotypes, there is some evidence suggesting that they share common genetic factors. Methods We implemented a genetic analysis incorporating pleiotropy and annotation to genome‐wide association summary statistics data for approximately 120 000 psoriasis and schizophrenia samples, as well as whole blood expression quantitative trait loci in 5311 samples. Results We observed a significant pleiotropic effect between psoriasis and schizophrenia ( p = 5.92 × 10 −43 ). We characterized an enrichment of whole blood expression quantitative trait loci in genome‐wide association data for psoriasis and schizophrenia ( q 1 / q 0 > 1.5, p < 10 −77 ) and we revealed that common variants for both diseases were more likely to confer expression quantitative trait loci effects ( q 1 / q 0 = 4.197, SE = 0.183). Through joint analysis of the associations in the combined psoriasis and schizophrenia data set, we identified a potential susceptibility PTPN1 gene for psoriasis, which may affect the risk of psoriasis through modulation of the function of TYK2 kinase. Conclusions The results of the present study highlight the expression quantitative trait loci enrichment and pleiotropy in psoriasis and schizophrenia, and also suggest a possible key role of the PTPN1 gene in the etiology of psoriasis.