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Identification of microRNAs related to myocardial ischemic reperfusion injury
Author(s) -
Liu Kang,
Ma Li,
Zhou Fang,
Yang Yingcong,
Hu HaiBo,
Wang Long,
Zhong Liang
Publication year - 2019
Publication title -
journal of cellular physiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.529
H-Index - 174
eISSN - 1097-4652
pISSN - 0021-9541
DOI - 10.1002/jcp.27795
Subject(s) - microrna , identification (biology) , reperfusion injury , ischemic injury , cardiology , medicine , myocardial ischemia , ischemia , biology , gene , genetics , botany
Previous studies have suggested that microRNAs (miRNAs) are associated with the progression of myocardial ischemic reperfusion (I/R) injury. However, inconsistent results have been obtained due to the differences in sequencing platform, control selection, and filtering conditions. To explore the key miRNAs in the pathogenesis of myocardial I/R injury and develop miRNA diagnostic biomarkers for myocardial I/R injury prevention, we performed a systematic analysis of publicly available myocardial I/R injury miRNA expression data and investigated the function of the signature miRNA. A total of 17 representative myocardial I/R injury miRNA datasets were extracted from the Google Scholar website and a systematic bioinformatics analysis was done. TargetScan software was used to predict the miRNA target genes, and functional enrichment and transcription factor binding analyses were performed on the target genes using the DAVID and Tfacts databases. In this study, a total of 10 signature miRNAs associated with myocardial I/R injury were identified, which included eight significantly upregulated miRNAs (miR‐let‐7b‐3p, miR‐let‐7c‐3p, miR‐15b‐3p, miR‐195‐3p, miR‐21‐5p, miR‐214‐5p, miR‐24‐3p, and miR‐320a) and two significantly downregulated miRNAs (miR‐126‐5p and miR‐499a‐5p). They had different influences on myocardial I/R injury. The upregulated target gene‐expressing signature messenger RNAs (mRNAs) were mainly involved in the transcriptional regulation process of GO: 0000122, negative regulation of transcription from RNA polymerase II promoter, and so on, while downregulated expression of signature mRNAs was mainly involved in GO:0070534, protein K63‐linked ubiquitination, and so forth. To summarize, 10 signature miRNAs of myocardial I/R injury pathogenesis were identified and their target genes and transcription factors were revealed, suggesting the potential novel therapeutic targets for myocardial I/R injury.