Open AccessRapid identification of the Candida glabrata species complex by high‐resolution melting curve analysis
Author(s) -
Cai Shuqian,
Xu Juan,
Shao Yakun,
Gong Jie,
Zhao Fei,
He Lihua,
Shan Xiaoyun
Publication year - 2020
Publication title -
journal of clinical laboratory analysis
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.536
H-Index - 50
eISSN - 1098-2825
pISSN - 0887-8013
DOI - 10.1002/jcla.23226
Subject(s) - candida glabrata , melting curve analysis , high resolution melt , identification (biology) , high resolution , microbiology and biotechnology , biology , computational biology , chemistry , geography , candida albicans , botany , genetics , polymerase chain reaction , archaeology , gene
Background Candida glabrata is a common pathogen that causes invasive candidiasis. Among non‐ albicans Candida infections, C glabrata infections are associated with the highest fatality rates. Candida glabrata sensu stricto , Candida nivariensis , and Candida bracarensis have been identified and together form the C glabrata species complex. It is difficult to detect the two rare species by traditional laboratory methods. This study established a method for the rapid identification of members of the C glabrata species complex based on high‐resolution melting curve (HRM) analysis and evaluated its practical application. Methods The internal transcribed spacer (ITS) region was used as target gene region to design specific primers. HRM analysis was performed with three subspecies of the C glabrata species complex and negative controls to test its specificity and sensitivity. To evaluate its practical application, the HRM technique was tested with clinical isolates, and the results were compared with the DNA sequencing results. Results Differences were detected among the melting profiles of the members of the C glabrata species complex. The negative controls were not amplified, indicating the high specificity of the method. The minimum detection limits of C glabrata sensu stricto , C nivariensis, and C bracarensis were approximately 1 × 10 1 copies/µL or less. The results of the HRM analysis of the clinical isolates were consistent with the DNA sequencing results. Conclusions The HRM method is sensitive and can be used to rapidly identify the members of the C glabrata species complex. The method can allow early and targeted treatment of patients with invasive candidiasis.