Open AccessCase–Control Study on Impact of the Telomerase Reverse Transcriptase Gene Polymorphism and Additional Single Nucleotide Polymorphism ( SNP )– SNP Interaction on Non‐Small Cell Lung Cancers Risk in Chinese Han Population
Author(s) -
Xing Yanli,
Liu Feng,
Li Jianfeng,
Lin Jiancong,
Zhu Guodong,
Li Ming,
Zhang Changran,
Niu Yuanyuan
Publication year - 2016
Publication title -
journal of clinical laboratory analysis
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.536
H-Index - 50
eISSN - 1098-2825
pISSN - 0887-8013
DOI - 10.1002/jcla.21982
Subject(s) - multifactor dimensionality reduction , single nucleotide polymorphism , snp , genotype , allele , lung cancer , case control study , oncology , medicine , logistic regression , telomerase reverse transcriptase , biology , genetics , gastroenterology , telomerase , gene
Aims To investigate the impact of telomerase reverse transcriptase ( TERT ) gene polymorphism and additional SNP – SNP interaction on non‐small cell lung cancer ( NSCLC ) risk in Chinese population. Methods A total of 828 participants (526 males, 302 females), with a mean age of 71.3 ± 15.7 years old, were selected, including 410 NSCLC patients and 418 normal participants. Logistic regression was performed to investigate association between single nucleotide polymorphism ( SNP ) and NSCLC risk. Generalized multifactor dimensionality reduction ( GMDR ) was used to analysis the interaction among four SNP s. Results Non‐small cell lung cancer risk was significantly higher in carriers of G allele of the rs2736100 polymorphism than those with TT ( TG + GG vs. TT , adjusted OR (95% CI = 1.68 (1.28–2.07) . In addition, we also found that NSCLC risk was also significantly higher in carriers of A allele of the rs2736098 polymorphism than those with GG ( GA + AA vs. GG , adjusted OR (95% CI ) = 1.52 (1.19–1.93) . GMDR analysis indicated that there was a significant two‐locus model ( P = 0.0100) involving rs2736098 and rs2736100 , indicating a potential gene–gene interaction between rs2736098 and rs2736100 . Overall, the two‐locus models had a cross‐validation consistency of 10 of 10, and had the testing accuracy of 62.17%. We found that patients with GA or AA of rs2736098 and TG or GG of rs2736100 genotype have the highest NSCLC risk, compared to patients with GG of rs2736098 and TT of rs2736100 genotype, OR (95% CI ) was 2.52 (1.68–3.68), after covariates adjustment. Conclusions Minor allele of rs2736098 and rs2736100 in TERT gene and interaction between the two SNP were associated with increased risk of NSCLC risk.