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A New Method for Molecular Mechanics
Author(s) -
Saunders Martin,
Jarret Ronald M.
Publication year - 1986
Publication title -
journal of computational chemistry
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.907
H-Index - 188
eISSN - 1096-987X
pISSN - 0192-8651
DOI - 10.1002/jcc.540070420
Subject(s) - molecular mechanics , force field (fiction) , steric effects , torsion (gastropod) , molecular geometry , energy minimization , molecule , dihedral angle , formalism (music) , field (mathematics) , molecular dynamics , classical mechanics , chemistry , geometry , computational chemistry , physics , mathematics , quantum mechanics , stereochemistry , medicine , art , musical , hydrogen bond , surgery , visual arts , pure mathematics
A promising new method for optimizing molecular structures is described. In place of the terms involving bond angles and torsion angles, used in the force fields of conventional molecular mechanics, two‐body central forces between atoms are used exclusively, resulting in a considerable computational advantage. The program STRFIT, using this method has been tested by comparing geometries obtained with those found using the popular molecular mechanics program MM2 (Allinger) for a variety of cyclic and acyclic molecules. For unstrained molecules, the difference in steric energy between geometries refined by STRFIT and MM2 is only a few tenths of a kilocalorie and up to about a kilocalorie for strained molecules. Geometry optimization with STRFIT, to a structure that is slightly higher in energy than the structure arrived at by MM2 starting from the same initial starting geometry, is three to eight times faster. A complete new package of programs for conveniently and rapidly doing molecular mechanics calculations is described. It includes a convenient algorithm for the input of approximate molecular structures, a rapid structure‐optimizing module using a pure Central force‐field approach, and a drawing program designed for use with a dot‐matrix printer or a laser printer.