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2D representation of protein secondary structure sequences and its applications
Author(s) -
Liu Liwei,
Wang Tianming
Publication year - 2006
Publication title -
journal of computational chemistry
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.907
H-Index - 188
eISSN - 1096-987X
pISSN - 0192-8651
DOI - 10.1002/jcc.20430
Subject(s) - representation (politics) , protein secondary structure , computer science , class (philosophy) , protein structure , theoretical computer science , computational biology , artificial intelligence , chemistry , biology , biochemistry , politics , political science , law
In terms of the classification of the protein secondary structures, we propose a 2D representation of protein secondary structure sequences. The representation are used to display, analyze, and compare the secondary structure sequences. Based on this representation, we assign the structural class to the protein, and verify the advantage or disadvantage of the methods of predicted protein second structure. © 2006 Wiley Periodicals, Inc. J Comput Chem 27: 1119–1124, 2006